Shopify inventory management apps have become critical for e-commerce teams trying to keep stock accurate while selling across channels. The right tool doesn’t just “track inventory”—it helps prevent stockouts, reduce overbuying, and keep fulfillment reliable as order volume grows.
I wrote this guide to help Shopify merchants choose inventory apps based on how they operate (single store vs multi-store, 3PL vs in-house, forecasting vs basic sync), so you can shortlist faster and avoid tools that don’t match your workflow.
This list covers widely used Shopify inventory management apps and highlights what each one is best suited for.
What is Inventory Management?
Inventory management is the process of tracking and controlling stock levels, purchase orders, and fulfillment across locations and sales channels. For Shopify stores, it means keeping bestsellers available, avoiding overspending on slow movers, and maintaining accurate counts as orders, returns, and restocks happen.
Shopify supports basic tracking, but many stores adopt specialized apps for real-time sync, automated reordering, forecasting, and multi-channel consistency. When fulfillment is supplier-led, inventory tools are often paired with dropshipping apps to keep product and stock data aligned.
Why Inventory Management is Important for Shopify Stores
Inventory directly impacts revenue and customer experience. Stockouts can lead to lost sales and higher support load, while overstock ties up cash and increases discounting pressure. As a store grows, inventory complexity rises through multiple SKUs, bundles, locations, suppliers, and sales channels.
A strong inventory setup helps stores maintain accuracy, plan reorders on time, and keep fulfillment predictable, without relying on manual spreadsheets or reactive decisions.
10 Best Shopify Inventory Management Apps
1. Stock Sync
⭐ Rating: 4.9/5 (1000+ reviews)
Stock Sync is built for Shopify stores that manage inventory across multiple external sources and need absolute consistency in stock levels. It is commonly used when inventory updates come from CSV feeds, APIs, suppliers, or ERPs, and accuracy matters more than forecasting.
The app focuses on reliable synchronization rather than planning, making it a practical choice for merchants dealing with frequent stock changes across systems.
Key Features
- Update product information and inventory quantities across platforms
- Transfer products seamlessly to Shopify store
- Compatible with multiple data formats (CSV, XML, Google Sheets)
- Robust API integration capabilities
- Real-time synchronization across channels
What Sets It Apart
- Intuitive interface requiring minimal technical knowledge
- Flexible data import/export options
- Regular updates and responsive customer support
- Comprehensive documentation and setup guides
Best For: E-commerce businesses managing inventory across multiple platforms and requiring frequent stock updates.
Price: Free plan available for basic features
2. Syncio Multi Store Sync
⭐ Rating: 4.8/5 (950+ reviews)
Syncio is built for Shopify merchants managing multiple stores or brands that share inventory. It keeps stock levels, product details, and order data synchronized across storefronts in real time, helping prevent overselling and mismatched availability. Syncio is especially useful when inventory needs to flow between stores, warehouses, or regions while maintaining centralized control without manual reconciliation.
Key Features
- Synchronize and import inventory across stores
- Comprehensive product information management
- Orders and payouts tracking capabilities
- Scheduled product transitions
- Real-time inventory notifications
What Sets It Apart
- Specialized in multi-store operations
- Automated synchronization schedules
- Built-in conflict resolution
- Advanced mapping capabilities
Best For: Multi-store owners and businesses with complex inventory synchronization needs.
Price: Free plan available with premium features in paid tiers
3. Prediko
⭐ Rating: 4.7/5 (800+ reviews)
Prediko is built for Shopify brands that need proactive inventory planning rather than reactive stock tracking. It uses AI-driven forecasting to help merchants anticipate demand, plan purchase orders, and reduce stockouts or excess inventory.
Prediko is especially suited for D2C brands with growing SKU counts, seasonal demand patterns, or subscription-driven sales that require accurate, forward-looking inventory decisions.
Key Features
- AI-driven sales forecasting
- Smart inventory planning
- Streamlined purchase order management
- Detailed inventory reports
- BOM management
What Sets It Apart
- Advanced AI algorithms for accurate predictions
- User-friendly dashboard
- Customizable reporting options
- Integration with multiple data sources
Your Store, Open for Business - Fast
Custom Shopify builds that convert browsers into buyers.
Best For: Data-driven businesses seeking automated forecasting and planning solutions.
Price: Free plan available for basic features
4. QuickBooks Commerce
⭐ Rating: 4.6/5 (850+ reviews)
QuickBooks Commerce is suited for Shopify businesses that want inventory management closely tied to accounting and financial reporting. It syncs stock, orders, and payouts across sales channels while keeping inventory and accounting data aligned. This makes it useful for merchants managing multiple warehouses or channels who need accurate financial visibility alongside inventory control without maintaining separate systems.
Key Features
- Sync product & stock across platforms
- Fulfill orders from various warehouses
- Handle orders from multiple channels
- Integrated inventory tracking
- Automated accounting integration
What Sets It Apart
- Native QuickBooks integration
- Multi-warehouse support
- Comprehensive order management
- Real-time financial tracking
Best For: Businesses requiring integrated accounting and inventory solutions.
Price: Free plan available with scalable paid options
5. Katana Manufacturing ERP
⭐ Rating: 4.5/5 (750+ reviews)
Katana is designed for Shopify businesses involved in manufacturing or assembly-based workflows. It connects sales orders with production planning, raw material tracking, and finished goods inventory in real time. Katana works best for brands that need visibility across work-in-progress, components, and fulfillment, helping production-driven teams plan accurately while keeping Shopify inventory and order statuses in sync.
Key Features
- Import incoming orders from Shopify
- Create visual production plans
- Synchronize fulfillment status and inventory
- Manufacturing process management
- Real-time inventory control
What Sets It Apart
- Manufacturing-specific features
- Visual production planning
- Material requirement planning
- End-to-end production tracking
Best For: Manufacturing businesses and companies with production processes.
Price: Starting from $199/month
6. Inventory Planner
⭐ Rating: 4.5/5 (700+ reviews)
Inventory Planner is built for Shopify retailers that rely on historical sales data to guide replenishment decisions. It focuses on demand forecasting, purchase order planning, and stock level optimization across SKUs. Inventory Planner is especially useful for stores managing seasonal demand, vendor lead times, and growth-focused assortments where planning accuracy matters more than real-time inventory synchronization.
Key Features:
- Forecasting and inventory reporting
- Sync with sales history
- Generate purchase orders
- Demand prediction
- Stock level optimization
What Sets It Apart:
- Advanced forecasting algorithms
- Detailed reporting capabilities
- Purchase order automation
- Seasonal trend analysis
Best For: Retailers focusing on data-driven inventory decisions.
Price: Starting from $119.99/month
7. SKULabs
⭐ Rating: 4.4/5 (650+ reviews)
SKULabs is designed for Shopify merchants running warehouse-led operations where order accuracy and fulfillment speed are critical. It combines inventory control with barcode-based picking, packing, and shipping workflows to reduce errors at scale. SKULabs is best suited for businesses managing multiple channels, locations, or carriers that need tight coordination between inventory, warehouse processes, and order fulfillment.
Key Features:
- Manage inventory, warehouse, and orders across channels
- Barcode scanning for order accuracy
- Compare shipping rates from different carriers
- Multi-channel inventory control
- Order fulfillment optimization
What Sets It Apart:
- Advanced warehouse management
- Integrated shipping solutions
- Barcode scanning capabilities
- Multi-location support
Best For: Businesses with complex warehouse operations.
Price: Starting from $299/month
8. Fabrikator Inventory Assistant
⭐ Rating: 4.3/5 (600+ reviews)
Fabrikator is suited for Shopify merchants who want early signals around stock risk rather than complex planning workflows. It focuses on inventory predictions, low-stock alerts, and pre-order or backorder management to help prevent missed sales. Fabrikator works well for small to mid-sized stores that need actionable insights without the overhead of full forecasting or enterprise inventory systems.
Key Features
- Inventory predictions
- Manage out-of-stock products and pre-orders
- Tailored insights and reports
- Stock level optimization
- Customized reporting tools
What Sets It Apart
- Smart prediction algorithms
- Pre-order management
- Customizable reporting
- User-friendly interface
Your Store, Open for Business - Fast
Custom Shopify builds that convert browsers into buyers.
Best For: Small to medium businesses seeking automated inventory predictions.
Price: Free plan available
9. Netsuite Inventory Management
⭐ Rating: 4.2/5 (550+ reviews)
NetSuite is built for enterprise Shopify businesses that require centralized inventory control across multiple locations, channels, and business units. It supports demand-based planning, advanced reporting, and deep operational visibility across warehouses, 3PLs, and marketplaces. NetSuite is best suited for large organizations where inventory decisions are tightly connected to finance, supply chain operations, and long-term planning rather than day-to-day stock updates.
Key Features
- Integrates with eBay and Etsy
- Get inventory visibility across locations
- Demand-based planning
- Seasonal trend analysis
- Multi-channel inventory management
What Sets It Apart
- Enterprise-grade features
- Comprehensive marketplace integration
- Advanced analytics
- Scalable solution
Best For: Enterprise businesses requiring comprehensive inventory solutions.
Price: Starting from $199/month
10. Linnworks
⭐ Rating: 5/5 (500+ reviews)
Linnworks is designed for Shopify sellers operating across multiple marketplaces and fulfillment channels. It centralizes inventory, orders, and warehouse operations into a single system, reducing discrepancies between platforms. Linnworks works best for multi-channel merchants who need consistent stock visibility, automated workflows, and coordinated fulfillment across marketplaces, warehouses, and sales channels without managing each channel independently.
Key Features
- Unifies online sales process across channels
- Consolidates inventory operations
- Integrated warehouse management
- Order processing automation
- Cross-channel synchronization
What Sets It Apart
- Multi-channel focus
- Automated workflows
- Comprehensive analytics
- Scalable platform
Best For: Multi-channel sellers requiring unified inventory management.
Price: Free to install with premium features available
Comparison Table: Shopify Inventory Management Apps
| App Name | Starting Price | Best For | Key Features |
Stock Sync | Free | Multi-platform sellers | Real-time sync, Multiple formats |
Syncio | Free | Multi-store owners | Store sync, Auto-scheduling |
Prediko | Free | Data-driven businesses | AI forecasting, Smart planning |
QuickBooks Commerce | Free | Enterprise users | Multi-warehouse, Order management |
Katana | $199/month | Manufacturers | Production planning, BOM management |
Inventory Planner | $119.99/month | Growth-focused retailers | Forecasting, Purchase orders |
SKULabs | $299/month | Warehouse operators | Barcode scanning, Shipping rates |
Fabrikator | Free | Small businesses | Predictions, Pre-order management |
Netsuite | $199/month | Enterprise businesses | Multi-channel, Advanced analytics |
Linnworks | Free | Multi-channel sellers | Unified operations, Automation |
How to Choose the Right Inventory Management App
Choosing an inventory management app for your Shopify store simply depends on what features your store needs and how you prefer to manage stock. Here’s a brief guide:
Step 1: Define your setup: single store vs multi-store, in-house vs 3PL, and number of sales channels.
Step 2: Pick the outcome you need: real-time sync, forecasting, automated reordering, PO workflows, or warehouse accuracy.
Step 3: Validate integration fit: Shopify + accounting, shipping, marketplaces, and any ERP/warehouse tools.
Step 4: Stress-test with a trial: run a real SKU set, real reorder cycle, and at least one fulfillment workflow.
Step 5: Check support quality: onboarding, documentation, response time, and issue resolution history.
Step 6: Confirm pricing at scale: ensure costs remain predictable as orders, SKUs, or locations grow.
Conclusion
Inventory management is no longer just about tracking stock, it’s about making timely, informed decisions as your Shopify store grows. The apps covered in this list serve different operational needs, from basic synchronization to forecasting, manufacturing, and multi-channel control.
Choosing the right tool comes down to how your store fulfils orders, plans reorders, and scales over time. When inventory systems match real workflows, stores operate more predictably, protect cash flow, and avoid preventable fulfillment issues.
Frequently Asked Questions
1. Is Shopify good for inventory management?
Shopify works well for basic inventory tracking, especially for single-location stores. For multi-location, forecasting, automated reordering, or multi-channel sync, most stores add a specialized inventory app.
2. Can I use Shopify to track inventory?
Yes. Shopify tracks inventory per product and variant. Apps become useful when you need real-time sync across channels, purchase order workflows, barcode operations, or inventory forecasting.
3. How do I manage stock inventory on Shopify?
You can manage stock in Shopify Admin by adjusting quantities, setting policies, and tracking variants. For advanced needs like replenishment planning and multi-warehouse operations, use an inventory app.
4. What is the best app to keep track of inventory?
There isn’t one best app for everyone. The best choice depends on whether you need multi-store sync, forecasting, manufacturing workflows, warehouse accuracy, or enterprise-grade controls.
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